![]() Generate Variant Calling Files (VCF) to flag variants in your NGS alignments using SAMtools. View and save quality scores and metadata of your NGS raw data files with FastQC reports. Enhanced RNA-Seq visualizations with custom sorting and filtering options. Sequencher 5.4 also has replicates functionality with a unique Conditions and Replicates Editor for Cuffdiff and Cuffnorm. Expanded Cufflinks suite with the addition of Cuffquant and Cuffnorm. This new release adds features to Sanger, NGS and RNA-Seq analyses such as. Gene Codes announces the release of Sequencher 5.4. Primer sequences sent to your Sequencher project from Sequencher Connections have colored bases and primer features applied to them. Sequencher Connections now offers the ability to send primer pair sequences returned from a Primer-BLAST run to your Sequencher project. An updated External Data Browser that includes run results for new DNA-Seq options for GSNAP Databases and BWA Indexes. ![]() An updated External Data Browser that now includes a Final Run Status column that will report statuses of SUCCESS and FAILED. Sequencher is able to handle larger genomes when aligning sequences using GSNAP and BWA. Build GSNAP Databases and BWA Indexes that can be re-used and persisted with your project. This new release adds features to Sanger and NGS such as. Gene Codes announces the release of Sequencher 5.4.1. Enhancements to the External Data Browser (EDB). GSNAP and BWA-MEM workflows now produce BAM files. For hybrid sequencing projects, you can create NGS reference databases/indexes directly from the consensus sequences in the Project Window in addition to linking to an external sequence. Ability to adjust the font size in the Project Window. New features for Sanger and Next-Generation DNA Sequence Analysis include: Sanger. CodeLinker also features Self-Organizing Maps (SOM's) and Principle Component Analysis (PCA) CodeLinker also brings you prediction tools that allow you to search your data for associations and then apply those associations to new samples. You can use Sub-Linear Association Mining (SLAM) to search your data for associations and then use the associations to train an Artificial Neural Network (ANN). You can also explore your data with an Integrated Bayesian Inference System (IBIS) classifier to find patterns of gene expression, and then use those patterns to perform Discriminant Analysis. ![]() With CodeLinker, you can choose to analyze your data with a number of different clustering algorithms. You can then visualize the cluster data with a variety of plots. Gene Codes announces the release of CodeLinker 1.0, software for the analysis of RNA-Seq and microarray data. ![]() Easily manage all of your DNA-Seq and RNA-Seq projects with an enhanced External Data Browser. Expanded Cufflinks suite with the addition of Cuffquant and Cuffnorm.Ī unique Conditions and Replicates Editor for Cuffdiff and Cuffnorm. Build GSNAP Databases and BWA Indexes that can be re-used for aligning to whole genomes. Novice users can generate results with minimal time investment while experienced users.Įasily use consensus sequences from the Project Window as a reference sequence for NGS alignments for hybrid sequencing projects. Gene Codes has focused on making Sequencher an easy tool to learn. Send primer pair sequences from Primer-BLAST runs in Sequencher Connections to your Sequencher project. New and enhanced features for all of your DNA sequence analysis.
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